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S. aureus Example of Raw Genotype Data Downloaded from NCBI via Google Cloud BigQuery

Source: R/data.R
staph_geno_ncbi_cloud_raw.Rd

AMRfinderplus genotypes sourced from NCBI via query_ncbi_bq_ast function, without reformating.

Usage

staph_geno_ncbi_cloud_raw

Format

staph_geno_ncbi_cloud_raw A data frame with 4064 rows and 9 columns representing all Staphylococcus aureus genotyping results for markers associated with class aminoglycoside or tetracycline.

Columns include:

  • biosample_acc: Sample identifier.

  • scientific_name: Organism name.

  • Gene symbol, Class, Subclass, Element type, Element subtype, Method, Hierarchy_node: Key results fields from AMRfinderplus.

Source

https://www.ncbi.nlm.nih.gov/pathogens/microbigge/