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S. aureus Example of Raw Phenotype Data Downloaded from NCBI via Google Cloud BigQuery

Source: R/data.R
staph_ast_ncbi_cloud_raw.Rd

Phenotypes sourced from NCBI via query_ncbi_bq_ast function, without reformating.

Usage

staph_ast_ncbi_cloud_raw

Format

staph_ast_ncbi_cloud_raw A data frame with 142 rows and 11 columns representing all Staphylococcus aureus phenotyping results for amikacin and doxycycline.

Columns include:

  • BioSample: Sample identifier.

  • Antibiotic: Antibiotic name.

  • Resistance phenotype: S/I/R phenotypes as downloaded from NCBI.

  • ...: Additional data columns from NCBI.

Source

https://www.ncbi.nlm.nih.gov/pathogens/ast