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Example Resistance Gene Identifier (RGI) v6.0.6 Genotype Data

Source: R/data.R
rgi_raw.Rd

Raw RGI v6.0.6 results file (run with --include_loose) for 12 genomes of multiple species, one AMR determinant per row. Includes multiple species to cover all four model types currently detected by RGI (protein homolog model, protein variant model, protein overexpression model, and rRNA gene variant model) Includes Perfect, Strict, and Loose hits to test exclude_loose parameter

Usage

rgi_raw

Format

rgi_raw A data frame with 21,203 rows and 28 columns:

  • ORF_ID: Sample identifier

  • ...: RGI results columns

Source

Four colistin-resistant isolates from Bioproject PRJNA966919 https://www.ncbi.nlm.nih.gov/datasets/genome/?bioproject=PRJNA966919.

One genome with rRNA gene variant models detected (GCF_000249055.1).