Phenotyping data published in Mills et al, Genome Medicine (2022) 14:147, downloaded via EBI AMR portal, and imported to AMRgen phenotype table format. Corresponding genotype data is available in geno_eco_2075.
Format
pheno_eco_2075 A data frame with 37350 rows and 37 columns representing MIC results for 2075 E. coli isolates tested against 18 drug agents, using BD Phoenix.
Columns include:
id: Sample identifier (BioSample).drug_agent: Antibiotic identifier, as class 'ab'.mic: MIC data, as class 'mic'.pheno_provided: S/I/R phenotypes as downloaded from EBI....: Additional data columns from EBI.