Ceftriaxone MIC data for Neisseria gonorrhoeae isolates from multiple studies enriched for decreased susceptibility and resistance to ceftriaxone, including Euro-GASP 2020, ceftriaxone-resistant isolates from the United Kingdom and England, isolates from Asia, and WHO reference genomes. Used to investigate mosaic PBP2 variants and their association with ceftriaxone MICs.
Format
ngono_cro_pheno_raw A data frame with 2,191 rows and 4 columns:
id: Sample identifier (ENA run accession).Ceftriaxone: MIC value in mg/L for ceftriaxone (character, to preserve inequality prefixes).penA: penA mosaic allele type identifier (e.g.60.001,237.001).study: Source study identifier (e.g.fifer2024).
Source
ENA projects PRJEB58139, PRJEB57389, PRJEB76977, PRJEB45627, PRJNA577446, PRJNA776899, PRJNA778600, PRJNA560592, PRJNA874857, PRJNA909328, PRJNA957547, PRJNA1161034, PRJNA1189294, PRJNA1067895. See also Golparian et al. (2024) https://doi.org/10.1016/S2666-5247(23)00370-1, Day et al. (2022) https://doi.org/10.2807/1560-7917.ES.2022.27.46.2200803, Fifer et al. (2024) https://doi.org/10.1093/jac/dkae369, van der Veen et al. (2026) https://doi.org/10.1093/cid/ciaf530, Unemo et al. (2024) https://doi.org/10.1093/jac/dkae176.