The antimicrobial susceptibility testing (AST) data from the blantyreESBL Github from Dr. Joseph Lewis. Antimicrobial sensitivity testing (AST) was carried out on a subset of isolates using the disc-diffusion method using British Society for Antimicrobial Chemotherapy (BSAC) guidelines (https://bsac.org.uk/). AST was carried out for meropenem, amikacin, chloramphenicol, ciprofloxacin, co-trimoxazole and gentamicin. However this dataset only contains the raw phenotype data (S/R).
Format
btESBL_pheno A data frame with 609 rows and 9 columns:
...1: Row count.supplier_name: Strain ID.organism: organism.amikacin: amikacin antimicrobial susceptibility phenotype (S/R)chloramphenicol: chloramphenicol antimicrobial susceptibility phenotype (S/R)ciprofloxacin: ciprofloxacin antimicrobial susceptibility phenotype (S/R)cotrimoxazole: cotrimoxazole antimicrobial susceptibility phenotype (S/R)gentamicin: gentamicin antimicrobial susceptibility phenotype (S/R)meropenem: meropenem antimicrobial susceptibility phenotype (S/R)