NCBI AST for Escherichia coli tested against chloramphenicol

NCBI Antibiotic Susceptibility Test (AST) Browser data for Escherichia coli tested against chloramphenicol.

Usage

NCBI_Ecoli_pheno_chl

NCBI_Ecoli_pheno_chl A data frame with 6,859 rows and 17 columns:

id: Sample identifier, imported from the BioSample column in the raw input.
drug: Antibiotic code, interpreted from Antibiotic using as.ab.
mic: Minimum inhibitory concentration, formatted using as.mic.
disk: Disk diffusion zone, formatted using as.disk.
method, platform, guideline: Test method and platform and interpretation guideline.
pheno_provided: S/I/R interpretation as provided in the raw input.
spp_pheno: Species identifier, interpreted from Scientific name using as.mo, used to interpret ecoff and pheno columns.
...: Additional data columns from the NCBI AST Browser