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DASSIM phenotype metadata

Source: R/data.R
DASSIM_pheno_raw.Rd

Additional metadata relating to the DASSIM isolates found in Supplementary Data 1 of the following paper: Molecular mechanisms of re-emerging chloramphenicol susceptibility in extended-spectrum beta-lactamase-producing Enterobacterales. Nat Commun 15, 9019 (2024). Fabrice E Graf et al.

Usage

DASSIM_pheno_raw

Format

DASSIM_pheno_raw A data frame with 840 rows and 15 columns:

  • Strain_ID: Strain_ID.

  • ST: Sequence Type.

  • Species: Species.

  • CHL susceptibility: susceptibility to chloramphenicol

  • CatA1: CatA1 presence/absence

  • CatA2: CatA2 presence/absence

  • CatB4: CatB4 presence/absence

  • CatB3: CatB3 presence/absence

  • FloR: FloR presence/absence

  • CmlA1: CmlA1 presence/absence

  • CmlA5: CmlA5 presence/absence

  • study: study presence/absence

  • ENA accession: ENA accession.

  • lane: lane.

  • seq: seq.

Source

https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-024-53391-2/MediaObjects/41467_2024_53391_MOESM4_ESM.xls